PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 604aa    MW: 67567.8 Da    PI: 7.8721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24366genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06933526
                --SGGGGTS...--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartG...tCkyGdrCkFaHg 26
                +C+  a++G    C++G++C+F+H+
  PEQU_24366  9 ICSEVAKSGrteDCRFGGSCRFNHD 33
                599999999999************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.319935IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.164873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.702.9E-70247490IPR013785Aldolase-type TIM barrel
CDDcd028012.10E-88251486No hitNo description
SuperFamilySSF513956.72E-62251563No hitNo description
PfamPF012071.6E-49254521IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360335353IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
QEQKSAVHIC SEVAKSGRTE DCRFGGSCRF NHDINAFLAQ KPADLEGVCP FATFEGLCPY  60
GITCRFLNTH QKQTLENRDI SKKNSEVNIL KKDLQKLLWK NKFSFTKADS QLKALGLKGN  120
KSIVSKAGNG QLDTNQENSI VLNDLCADEV DDTRSMNANE MSQSPGKAIE TKCSSDSSDF  180
YESRRPKKVK SHVDGNIEAT YVGKCEREND LPNNSLPYCC EGASSIKMCS KSDLSIKPLA  240
REKKLVDFRG KLYLAPLTTV GNLPFRRICK NFGAEITCGE MAVCTNLLQG QASEWALLRR  300
HSSEDFFGVQ ICGAYPDSIA RTIELIDEQC EVDFIDINMG CPIDLIVNKG AGSSLLTKPM  360
RMKSIIQVAS GTAKGPVTIK VRTGFFEGRN RIDSLISDIY DWGTTAITVH GRSRQQRYSK  420
LADWNYIYQC TNNAPTGLQV LGNGDIFSYC DYNKHMADCP ELSTCMIARG ALIKPWIFTE  480
IKEQRHWDIS SGERLNIFRD FVNFGLEHWG SDTKGVETTR HFLLEWLSYT HRYIPVGLLD  540
IIPQRLNWRP PSYSGRDDLE TLMAFGSAAA LGRRISEMLL GKVPEGFTFA PKHKSNAYDK  600
AENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vhn_A5e-242515016247putative flavin oxidoreductase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992400.0KM399240.1 Iris japonica FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781781.10.0PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A0E0KM920.0A0A0E0KM92_ORYPU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGGSMUA_Achr4P21820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527